PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00190.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 563aa    MW: 62813.9 Da    PI: 4.6408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00190.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.51.4e-321382771128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                              lp+G++F+Ptd+e++  +L  kv+g +      +  +e+i++vd    i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r
  Sme2.5_00190.1_g00015.1 138 LPRGVKFDPTDQEII-WHLLGKVKGGDwnshpfI--DEFIPTVDkddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRR 219
                              699************.678889999986775332..334666655567**********.677888899****************** PP

                      NAM  77 atk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +++     + +W++tg++k+v+  +g + g+kk++v+y    +  k+ekt+Wvmh+y+l
  Sme2.5_00190.1_g00015.1 220 KIHgdnsgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYisPFKGGKAEKTNWVMHQYHL 277
                              85545544778************.99************6523777778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-37124296IPR003441NAC domain
PROSITE profilePS5100530.867138296IPR003441NAC domain
PfamPF023653.5E-14139277IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSDVIGFISG EVGEVGICVL GFSEGWYARF TVSTCIDRAT IGYKPSSPES TCEITLGMLL  60
LCEIFWLDST MDFEVRFAEK LELDQPSWLV DSRRIATKIK SASGDPGAVN WKSNPTKACP  120
NCQFIIDNND VSHDWPGLPR GVKFDPTDQE IIWHLLGKVK GGDWNSHPFI DEFIPTVDKD  180
DGICYTHPQN LPGVKQDGSV SHFFHRAIKA YNTGTRKRRK IHGDNSGDVR WHKTGRTKPV  240
ILDGIQRGCK KIMVLYISPF KGGKAEKTNW VMHQYHLGTG EDEREGEYIV SKVFYQQQQV  300
KQGERNEQDF PEDSECLVAK ADPHTPKSVT PEPPRGERLS SSTDARQQIV ASNISPVNQG  360
GGKVAYTLPS RDPTCGIKLD VASLSVQDII PGLFTTSLLA LHQYHAVEDY VQDDLRALAE  420
QTENQDQDIK NQIDETGTKV EAETGDDPKW WDSESQYLLD SQQLVEGLSL CDDLLASQSP  480
NRDGSENDKV QKCKPSLADY AHLGPEDLKK DLEECQQFVS DPANIEIDTP PDFRLSQLEF  540
GSQDSYIAWG GNKYGFDSAE QNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362531.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-176NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM0ZJN30.0M0ZJN3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81622430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-178NAC family protein